Based on Chapter 8 of ModernDive. Code for Quiz 12.
Load the R package we will use.
What is the average age of members that have served in Congress?
-Set random seed generator to 123
-Take a sample of 100 from the dataset congress_age
and assign it to congress_age_100
set.seed(4346)
congress_age_100 <- congress_age %>%
rep_sample_n(size = 100)
-congress_age is the population and congress_age_100 is the sample
-18635 is number of observations in the the population and 100 is the number of observations in your sample
Construct the confidence interval
1. Use specify
to indicate the variable from congress_age_100 that you are interested in
congress_age_100 %>%
specify(response = age)
Response: age (numeric)
# A tibble: 100 x 1
age
<dbl>
1 58
2 27.3
3 59.4
4 47.8
5 36.4
6 62.3
7 52.5
8 55.5
9 44
10 48
# … with 90 more rows
2. generate
1000 replicates of your sample of 100
Response: age (numeric)
# A tibble: 100,000 x 2
# Groups: replicate [1,000]
replicate age
<int> <dbl>
1 1 55.2
2 1 40.8
3 1 55.7
4 1 52.5
5 1 54.5
6 1 35.8
7 1 44.5
8 1 47.9
9 1 40.8
10 1 37.4
# … with 99,990 more rows
The output has 100,000 rows.
3. calculate
the mean for each replicate
-Assign to bootstrap_distribution_mean_age
-Display bootstrap_distribution_mean_age
bootstrap_distribution_mean_age <- congress_age_100 %>%
specify(response = age) %>%
generate(reps = 1000, type = "bootstrap") %>%
calculate(stat = "mean")
bootstrap_distribution_mean_age
# A tibble: 1,000 x 2
replicate stat
* <int> <dbl>
1 1 51.3
2 2 48.2
3 3 49.7
4 4 50.5
5 5 51.6
6 6 47.9
7 7 49.5
8 8 50.0
9 9 51.0
10 10 51.0
# … with 990 more rows
-The bootstrap_distribution_mean_age has 1000 means
4. visualize
the bootstrap distribution
visualize(bootstrap_distribution_mean_age)
Calculate the 95% confidence interval using the percentile method
-Assign the output to congress_ci_percentile
-Display congress_ci_percentile
congress_ci_percentile <- bootstrap_distribution_mean_age %>%
get_confidence_interval(type = "percentile", level = 0.95)
congress_ci_percentile
# A tibble: 1 x 2
lower_ci upper_ci
<dbl> <dbl>
1 48.5 52.7
Calculate the observed point estimate of the mean and assign it to obs_mean_age
Display obs_mean_age
,
obs_mean_age <- congress_age_100 %>%
specify(response = age) %>%
calculate(stat = "mean") %>%
pull()
obs_mean_age
[1] 50.533
-Shade the confidence interval
-Add a line at the observed mean, obs_mean_age
, to your visualization and color it “hotpink”
visualize(bootstrap_distribution_mean_age) +
shade_confidence_interval(endpoints = congress_ci_percentile) +
geom_vline(xintercept = obs_mean_age, color = "hotpink", size = 1)
-Calculate the population mean to see if it is in the 95% confidence interval
-Assign the output to pop_mean_age
-Display pop_mean_age
pop_mean_age <- congress_age %>%
summarize(pop_mean= mean(age)) %>% pull()
pop_mean_age
[1] 53.31373
-Add a line to the visualization at the, population mean, pop_mean_age
, to the plot color it “purple”
visualize(bootstrap_distribution_mean_age) +
shade_confidence_interval(endpoints = congress_ci_percentile) +
geom_vline(xintercept = obs_mean_age, color = "hotpink", size = 1) +
geom_vline(xintercept = pop_mean_age, color = "purple", size = 3)
ggsave(filename = "preview.png",
path = here::here("_posts", "2021-05-11-bootstrapping"))
-Is population mean the 95% confidence interval constructed using the bootstrap distribution? yes
-Change set.seed(123) to set.seed(4346). Rerun all the code.
-When you change the seed is the population mean in the 95% confidence interval constructed using the bootstrap distribution? no
-If you construct 100 95% confidence intervals approximately how many do you expect will contain the population mean? 95